What percentage of New York to San Juan flights are direct?

Across the trailing quarter, approximately 16.5% of flights from New York to San Juan are direct. For flights that include stopovers, the median number of stopovers is 2. This indicates that a significant portion of travelers on this route will typically have at least one connection.

How long is the flight from New York to San Juan?

The typical direct flight from New York to San Juan has a duration of 3 hours and 58 minutes, covering a distance of 2594 kilometers. Flights with one stop, however, are considerably longer, with a median duration of 11 hours and 21 minutes. Travelers should account for this difference when planning their journey.

How often do cheap flights from New York to San Juan come up?

Cheap flights from New York to San Juan are considered to come up frequently. This route is known for its regular availability of deals. Travelers can typically find favorable prices with some consistency.

Flights From New York

To San Juan

Cheap Flights from New York to San Juan

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Deals from

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RatePunk searches hundreds of travel sites at once for deals on flights to San Juan

Prices updated 6 days ago

483 airlines compared

80%+ AI score for best value

Fares are subject to change and may not be available for all dates. (Data last updated Oct 27, 2026.)

Today’s best flight deals from New York to San Juan

Explore current cheapest deals departing from New York to San Juan

2026-11-17 – 2026-11-19
NYC - San Juan
73% AI deal score
$248
$215
Round trip
2026-11-10 – 2026-11-13
NYC - San Juan
73% AI deal score
$263
$221
Round trip
2026-11-10 – 2026-11-26
NYC - San Juan
68% AI deal score
$207
$221
Round trip
2026-11-15 – 2026-11-18
NYC - San Juan
70% AI deal score
$239
$225
Round trip
2026-11-17 – 2026-11-18
NYC - San Juan
70% AI deal score
$237
$225
Round trip
2026-11-10 – 2026-11-12
NYC - San Juan
68% AI deal score
$194
$225
Round trip
2026-11-17 – 2026-11-19
NYC - San Juan
70% AI deal score
$237
$225
Round trip
2026-11-09 – 2026-11-18
NYC - San Juan
69% AI deal score
$215
$225
Round trip
2026-11-23 – 2026-11-27
NYC - San Juan
67% AI deal score
$182
$225
Round trip
2026-11-16 – 2026-11-20
NYC - San Juan
70% AI deal score
$238
$225
Round trip

New York to San Juan: Overview

Insights for flights from New York to San Juan

Most itineraries for flights from New York to San Juan connect at least once, with only 16.5% of recent fares being non-stop. For connecting itineraries, the typical number of stopovers is 2. This means that while direct flights from New York to San Juan are available, you will most often encounter options with one or more stops.

A typical journey from New York to San Juan takes about 3h 57m, including connections. This median duration accounts for both direct and connecting flights, with non-stop flights also averaging 3h 57m and connecting itineraries typically taking around 16h 35m.

For those seeking cheap flights from New York to San Juan, the route is classified as medium-haul, covering a distance of 2594 km. This distance places it in a category where both direct and connecting options are common, influencing overall travel time and price.

When is the cheapest time to fly from New York to San Juan? The most affordable months to fly are typically September, with a median fare of $462, followed by June at $464, and October at $480. These months offer the lowest median prices for this route.

Fares for flights from New York to San Juan typically range from $426–$845, with a median of $577. Right now, fares are above the typical level. Currently, new deals appear almost daily, but 0% of recent fares were classified as a good price, indicating that finding significantly discounted tickets might require careful monitoring.

How much is a round trip from New York to San Juan

Regular price: $173 - $393

Prices for flights from New York to San Juan are currently within the regular range.

The regular price range for this route is typically between $173 and $393. The current lowest deal is $213 with JetBlue Airways, for travel from November 17 to December 4.

now $213

Low $173

High $393

The cheapest time to fly from New York to San Juan

The cheapest month to fly from New York to San Juan is September, with a median price of $457. The most expensive month is April, with a median price of $1281. Prices are generally lower from January to November.

September

Cheapest

Flights from $457

April

Most Expensive

Flights from $1,281

Jan

Feb

Mar

Apr

May

Jun

Jul

Aug

Sep

Oct

Nov

Dec

Direct flights from New York to San Juan

JetBlue Airways

Last-minute flights going from New York to San Juan

Fri, Nov 6

⌛ Last-Minute

EWR - San Juan

New York (EWR) - San Juan (SJU)

Frontier Airlines

$328

$292

One-way

Fri, Nov 6

⌛ Last-Minute

EWR - San Juan

New York (EWR) - San Juan (SJU)

Frontier Airlines

$369

$297

One-way

Sat, Nov 7

⌛ Last-Minute

EWR - San Juan

New York (EWR) - San Juan (SJU)

Frontier Airlines

$369

$272

One-way

Sat, Nov 7

⌛ Last-Minute

SWF - San Juan

New York (SWF) - San Juan (SJU)

Breeze Airways

$310

$294

One-way

Mon, Nov 9

⌛ Last-Minute

EWR - San Juan

New York (EWR) - San Juan (SJU)

JetBlue Airways

$222

$225

One-way

Mon, Nov 9

⌛ Last-Minute

JFK - San Juan

New York (JFK) - San Juan (SJU)

JetBlue Airways

$278

$230

One-way

Biggest price drops on these dates for flights from New York to San Juan

2 nights

Nov 11 - Nov 13

$363 → $236

35%

3 nights

Feb 7 - Feb 10

$406 → $279

31%

2 nights

Oct 29 - Oct 31

$473 → $381

19%

7 nights

Feb 2 - Feb 9

$290 → $216

26%

Popular Airports to fly from New York to San Juan

New York - San Juan route insights

💸 Price insights

Recent fares are above the typical level

Recent fares for NYC to SJU are above the typical level, with a median price of $577.

📅 Best time to fly

September, June, and October are cheapest

Historically, September ($462), June ($464), and October ($480) offer the lowest median prices.

⏱️ Flight duration

Direct flights take 3h 57m

Direct flights from NYC to SJU typically take 3 hours and 57 minutes.

✈️ Airlines & availability

Connecting flights are common

Connecting flights are dominant for this route, with 16.5% of recent flights being direct.

🏆 Airline highlight

JetBlue Airways offers direct flights

JetBlue Airways is an airline that offers direct flights on the NYC to SJU route.

🎯 Booking tip

Deals are frequent for this route

Deals for flights from NYC to SJU are frequent, appearing often within a 30-day window.

New York main airports to depart from

Newark Liberty International (EWR)

Cheapest

Consider Newark Liberty International for flights from New York to San Juan, offering competitive prices.

📍 ~14 km from New York (reachable by car or train)

💸 Flights from ~$216

John F. Kennedy International (JFK)

John F. Kennedy International is a major hub for flights from New York to San Juan.

📍 ~21 km from New York (reachable by car or train)

💸 Flights from ~$230

LaGuardia (LGA)

LaGuardia is a convenient option for flights from New York to San Juan.

📍 ~13 km from New York (reachable by car or train)

💸 Flights from ~$230

New York Stewart International Airport (SWF)

New York Stewart International Airport is an alternative for flights from New York to San Juan.

📍 ~88 km from New York (reachable by car)

💸 Flights from ~$271

San Juan main airports to arrive at

Luis Muñoz Marín International (SJU)

Cheapest

Luis Muñoz Marín International Airport is a convenient arrival option for flights to San Juan.

📍 ~11 km from San Juan (reachable by car)

💸 Flights from ~$227

Airports nearby San Juan used as alternative

Aguadilla Rafael Hernandez (BQN)

Aguadilla Rafael Hernandez is a primary alternative for flights to the US mainland from Puerto Rico.

📍 ~135 km from San Juan (reachable by car, approximately a 2-hour drive)

💸 Flights from ~$309

Business & First Class Flight Deals to San Juan

Discover luxury on the budget with premium cabin class on flights from New York to San Juan.

Elite

Best Elite deals to San Juan

Exclusive daily First Class, Business Class, and Premium Economy flight deals, refreshed every 24 hours.

From LGA

Elite

Mar 06

San Juan, United States

84% AI deal score

$2,443

$1,720

Save $723

Porter Airlines, +1

Business Class

From EWR

Elite

Mar 20

San Juan, United States

84% AI deal score

$2,542

$1,832

Save $710

Porter Airlines, +1

Business Class

From EWR

Elite

Jan 23

San Juan, United States

84% AI deal score

$2,476

$1,857

Save $619

Porter Airlines, +1

Business Class

From LGA

Elite

Mar 27

San Juan, United States

83% AI deal score

$2,398

$1,774

Save $624

Porter Airlines, +1

Business Class

From EWR

Elite

Feb 13

San Juan, United States

83% AI deal score

$2,473

$1,852

Save $621

Porter Airlines, +1

Business Class

From EWR

Elite

Feb 06

San Juan, United States

83% AI deal score

$2,509

$1,852

Save $657

Porter Airlines, +1

Business Class

From EWR

Elite

Jan 02

San Juan, United States

81% AI deal score

$2,396

$1,969

Save $427

Porter Airlines, +1

Business Class

From EWR

Elite

Mar 06

San Juan, United States

81% AI deal score

$2,535

$2,016

Save $519

Porter Airlines, +1

Business Class

From EWR

Elite

Jan 01

San Juan, United States

80% AI deal score

$2,405

$2,061

Save $344

Porter Airlines, +1

Business Class

From LGA

Elite

Jan 29

San Juan, United States

80% AI deal score

$2,412

$2,103

Save $309

Porter Airlines, +1

Business Class

From EWR

Elite

Jan 23

San Juan, United States

80% AI deal score

$2,472

$2,153

Save $319

Porter Airlines, +1

Business Class

From EWR

Elite

Jan 23

San Juan, United States

80% AI deal score

$2,466

$2,168

Save $298

Porter Airlines, +1

Business Class

Frequently Asked Questions About Flights to San Juan

Historically, the best prices for flights from New York to San Juan are found when booking 28-59 days in advance. Within this window, the average price is typically around $592. Booking within 0-6 days of departure sees a significant increase, with average prices rising to approximately $1052. Even booking more than 60 days out tends to be more expensive, averaging $809.

Based on historical data from the trailing 90 days, a good price for a flight from New York to San Juan is considered to be $426 or less. The median price for this route has been $577. Prices can go higher, with 75% of observed prices being $845 or less.

Historically, the cheapest months to fly from New York to San Juan are September, June, and October. In September, the median price is typically around $462, while June sees a median of $464. October also offers competitive pricing with a median of $480, which is also the most expensive month in the trailing 270 days. The annual median price for this route is $577.

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Flights to San Juan from other cities

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New York to San Juan: Overview

Insights for flights from New York to San Juan

How much is a round trip from New York to San Juan

Regular price: $173 - $393

Prices for flights from New York to San Juan are currently within the regular range.

The regular price range for this route is typically between $173 and $393. The current lowest deal is $213 with JetBlue Airways, for travel from November 17 to December 4.

now $213

Low $173

High $393

The cheapest time to fly from New York to San Juan

September

Cheapest

Flights from $457

April

Most Expensive

Flights from $1,281

Jan

Feb

Mar

Apr

May

Jun

Jul

Aug

Sep

Oct

Nov

Dec

Direct flights from New York to San Juan

JetBlue Airways

Last-minute flights going from New York to San Juan

Fri, Nov 6

⌛ Last-Minute

EWR - San Juan

New York (EWR) - San Juan (SJU)

Frontier Airlines

$328

$292

One-way

Fri, Nov 6

⌛ Last-Minute

EWR - San Juan

New York (EWR) - San Juan (SJU)

Frontier Airlines

$369

$297

One-way

Sat, Nov 7

⌛ Last-Minute

EWR - San Juan

New York (EWR) - San Juan (SJU)

Frontier Airlines

$369

$272

One-way

Sat, Nov 7

⌛ Last-Minute

SWF - San Juan

New York (SWF) - San Juan (SJU)

Breeze Airways

$310

$294

One-way

Mon, Nov 9

⌛ Last-Minute

EWR - San Juan

New York (EWR) - San Juan (SJU)

JetBlue Airways

$222

$225

One-way

Mon, Nov 9

⌛ Last-Minute

JFK - San Juan

New York (JFK) - San Juan (SJU)

JetBlue Airways

$278

$230

One-way

Biggest price drops on these dates for flights from New York to San Juan

2 nights

Nov 11 - Nov 13

$363 → $236

35%

3 nights

Feb 7 - Feb 10

$406 → $279

31%

2 nights

Oct 29 - Oct 31

$473 → $381

19%

7 nights

Feb 2 - Feb 9

$290 → $216

26%

Popular Airports to fly from New York to San Juan

New York - San Juan route insights

💸 Price insights

Recent fares are above the typical level

Recent fares for NYC to SJU are above the typical level, with a median price of $577.

📅 Best time to fly

September, June, and October are cheapest

Historically, September ($462), June ($464), and October ($480) offer the lowest median prices.

⏱️ Flight duration

Direct flights take 3h 57m

Direct flights from NYC to SJU typically take 3 hours and 57 minutes.

✈️ Airlines & availability

Connecting flights are common

Connecting flights are dominant for this route, with 16.5% of recent flights being direct.

🏆 Airline highlight

JetBlue Airways offers direct flights

JetBlue Airways is an airline that offers direct flights on the NYC to SJU route.

🎯 Booking tip

Deals are frequent for this route

Deals for flights from NYC to SJU are frequent, appearing often within a 30-day window.

New York main airports to depart from

Newark Liberty International (EWR)

Cheapest

Consider Newark Liberty International for flights from New York to San Juan, offering competitive prices.

📍 ~14 km from New York (reachable by car or train)

💸 Flights from ~$216

John F. Kennedy International (JFK)

John F. Kennedy International is a major hub for flights from New York to San Juan.

📍 ~21 km from New York (reachable by car or train)

💸 Flights from ~$230

LaGuardia (LGA)

LaGuardia is a convenient option for flights from New York to San Juan.

📍 ~13 km from New York (reachable by car or train)

💸 Flights from ~$230

New York Stewart International Airport (SWF)

New York Stewart International Airport is an alternative for flights from New York to San Juan.

📍 ~88 km from New York (reachable by car)

💸 Flights from ~$271

San Juan main airports to arrive at

Luis Muñoz Marín International (SJU)

Cheapest

Luis Muñoz Marín International Airport is a convenient arrival option for flights to San Juan.

📍 ~11 km from San Juan (reachable by car)

💸 Flights from ~$227

Airports nearby San Juan used as alternative

Aguadilla Rafael Hernandez (BQN)

Aguadilla Rafael Hernandez is a primary alternative for flights to the US mainland from Puerto Rico.

San Juan, United States

80% AI deal score

$2,466

$2,168

Save $298

Porter Airlines, +1

Business Class

Frequently Asked Questions About Flights to San Juan

Cheap Flights from New York to San Juan

Today’s best flight deals from New York to San Juan

New York to San Juan: Overview

Insights for flights from New York to San Juan

How much is a round trip from New York to San Juan

The cheapest time to fly from New York to San Juan

Direct flights from New York to San Juan

Last-minute flights going from New York to San Juan

Biggest price drops on these dates for flights from New York to San Juan

Popular Airports to fly from New York to San Juan

New York - San Juan route insights

Recent fares are above the typical level

September, June, and October are cheapest

Direct flights take 3h 57m

Connecting flights are common

JetBlue Airways offers direct flights

Deals are frequent for this route

New York main airports to depart from

San Juan main airports to arrive at

Airports nearby San Juan used as alternative

Business & First Class Flight Deals to San Juan

Best Elite deals to San Juan

Mar 06

Mar 20

Jan 23

Mar 27

Feb 13

Feb 06

Jan 02

Mar 06

Jan 01

Jan 29

Jan 23

Jan 23

Frequently Asked Questions About Flights to San Juan

How early should I book New York to San Juan flights to get the cheapest price?

What is a good price for a flight from New York to San Juan?

When is the cheapest time of year to fly from New York to San Juan?

What percentage of New York to San Juan flights are direct?

How long is the flight from New York to San Juan?

How often do cheap flights from New York to San Juan come up?

Related routes

More routes from New York

Flights to San Juan from other cities

New York to San Juan: Overview

Insights for flights from New York to San Juan

How much is a round trip from New York to San Juan

The cheapest time to fly from New York to San Juan

Direct flights from New York to San Juan

Last-minute flights going from New York to San Juan

Biggest price drops on these dates for flights from New York to San Juan

Popular Airports to fly from New York to San Juan

New York - San Juan route insights

Recent fares are above the typical level

September, June, and October are cheapest

Direct flights take 3h 57m

Connecting flights are common

JetBlue Airways offers direct flights

Deals are frequent for this route

New York main airports to depart from

San Juan main airports to arrive at

Airports nearby San Juan used as alternative

Business & First Class Flight Deals to San Juan

Best Elite deals to San Juan

Mar 06

Mar 20

Jan 23

Mar 27

Feb 13

Feb 06

Jan 02

Mar 06

Jan 01

Jan 29

Jan 23

Jan 23

Frequently Asked Questions About Flights to San Juan

How early should I book New York to San Juan flights to get the cheapest price?

What is a good price for a flight from New York to San Juan?

When is the cheapest time of year to fly from New York to San Juan?