Are direct flights from San Juan to Panama City always the best option?

Direct flights offer convenience and save time, but they are not always the most budget-friendly choice. Flights with layovers can often be less expensive, depending on the route and airline. Consider your priorities for cost versus travel time when making your decision.

Can flexible travel dates help on San Juan to Panama City flights?

Absolutely, being flexible with your travel dates can significantly impact the price of your flight. Mid-week travel or flying during off-peak seasons often results in lower fares. Even shifting your departure or return by a day or two may lead to savings.

What extra costs should I check before booking San Juan to Panama City flights?

Before booking, always check for potential extra costs such as baggage fees, seat selection charges, and in-flight services. Some airlines may also charge for printing boarding passes at the airport. Being aware of these additional fees can help you calculate the total cost of your trip accurately.

Flights From San Juan

To Panama City

Cheap Flights from San Juan to Panama City

Browse current best options from San Juan. Become a member to unlock all deals and get alerts when new deals appear.

Deals from

San Juan

RatePunk searches hundreds of travel sites at once for deals on flights to Panama City

Prices updated 1 day ago

462 airlines compared

80%+ AI score for best value

Fares are subject to change and may not be available for all dates. (Data last updated Sep 15, 2026.)

Today’s best flight deals from San Juan to Panama City

Explore current cheapest deals departing from San Juan to Panama City

2026-09-27 – 2026-10-01
SJU - Panama
40% AI deal score
$356
$526
Round trip
2026-09-27 – 2026-10-03
SJU - Panama
40% AI deal score
$325
$526
Round trip
2026-10-05 – 2026-10-07
SJU - Panama
43% AI deal score
$382
$526
Round trip
2026-10-07 – 2026-10-10
SJU - Panama
43% AI deal score
$377
$526
Round trip
2026-10-07 – 2026-10-17
SJU - Panama
43% AI deal score
$337
$526
Round trip
2026-10-13 – 2026-10-20
SJU - Panama
43% AI deal score
$359
$526
Round trip
2026-10-15 – 2026-10-19
SJU - Panama
47% AI deal score
$533
$526
Round trip
2026-10-17 – 2026-10-24
SJU - Panama
43% AI deal score
$358
$526
Round trip
2026-10-24 – 2026-10-28
SJU - Panama
43% AI deal score
$372
$526
Round trip
2026-10-24 – 2026-10-30
SJU - Panama
43% AI deal score
$357
$526
Round trip

San Juan to Panama City: Overview

Insights for flights from San Juan to Panama City

For cheap flights from San Juan to Panama City, fares typically range from $288–$414, with a median of $322. Right now, current fares are significantly below the typical level, indicating a favorable time to consider booking. Deals are infrequent for this route, so setting a price alert can be particularly helpful for tracking price changes.

When is the cheapest time to fly from San Juan to Panama City? Historically, November stands out as the most affordable month, with a median fare of $253. June also offers competitive pricing, with a median of $322. While September shows a median of $506, these months generally present better value for travelers.

Most itineraries for this route are connecting flights, as 0% of recent fares were non-stop. This means that most itineraries connect at least once, with a typical connecting journey involving 1 stopover.

How long is the flight from San Juan to Panama City? A typical journey, including connections, takes approximately 12h 12m. This duration accounts for the layovers common on this route, reflecting the overall travel time you can expect.

The distance between San Juan and Panama City is approximately 2397 kilometers. This makes it a medium-haul route, typically involving several hours of flight time and often requiring connections.

How much is a round trip from San Juan to Panama City

Regular price: $296 - $555

Prices for flights from San Juan to Panama City are currently within the regular range.

The regular price range for this route is $296 to $555. The current lowest deal is $527 with United Airlines, for travel from Nov 9-Nov 16.

now $527

Low $296

High $555

The cheapest time to fly from San Juan to Panama City

The cheapest month to fly from San Juan to Panama City is November, with a median price of $253. The most expensive month is April, with a median price of $551. Prices are generally lower from June to November.

November

Cheapest

Flights from $253

April

Most Expensive

Flights from $551

Apr

Jun

Sep

Nov

Direct flights from San Juan to Panama City

United Airlines

Deutsche Luft Hansa

American Airlines

Last-minute flights going from San Juan to Panama City

Tue, Sep 15

⌛ Last-Minute

SJU - Panama

San Juan (SJU) - Panama (PTY)

$366

$611

One-way

Wed, Sep 16

⌛ Last-Minute

SJU - Panama

San Juan (SJU) - Panama (PTY)

$464

$611

One-way

Wed, Sep 16

⌛ Last-Minute

SJU - Panama

San Juan (SJU) - Panama (PTY)

$417

$611

One-way

Wed, Sep 16

⌛ Last-Minute

SJU - Panama City

San Juan (SJU) - Panama City (ECP)

United Airlines

$408

$768

One-way

Wed, Sep 16

⌛ Last-Minute

SJU - Panama City

San Juan (SJU) - Panama City (ECP)

United Airlines

$409

$768

One-way

Thu, Sep 17

⌛ Last-Minute

SJU - Panama

San Juan (SJU) - Panama (PTY)

$641

$554

One-way

Biggest price drops on these dates for flights from San Juan to Panama City

4 nights

Sep 17 - Sep 21

$641 → $554

14%

1 night

Sep 16 - Sep 17

$652 → $611

4 nights

Oct 15 - Oct 19

$533 → $526

6 nights

Oct 28 - Nov 3

$510 → $526

Popular Airports to fly from San Juan to Panama City

San Juan - Panama City route insights

💸 Price insights

Recent fares are above the typical level

Recent fares for San Juan to Panama City are above the typical level at $527.

📅 Best time to fly

November is historically cheapest

Historically, November is the cheapest month to fly from San Juan to Panama City, with a median of $253.

⏱️ Flight duration

Typically 12h 12m with 1 stop

Flights from San Juan to Panama City typically take 12h 12m, usually with one stopover.

✈️ Airlines & availability

Connecting flights are dominant

This route is dominated by connecting flights, with no direct flights available in the last 90 days.

🏆 Airline highlight

United Airlines has recent deals

United Airlines has offered recent deals on this route, including a $527 fare from kiwi.

🎯 Booking tip

Deals are rare for this route

Deals on flights from San Juan to Panama City are historically rare, appearing infrequently.

San Juan main airports to depart from

Luis Muñoz Marín International (SJU)

Cheapest

Luis Muñoz Marín International Airport is a convenient option for flights from San Juan to Panama City.

📍 ~11 km from San Juan (reachable by car)

💸 Flights from ~$448

Panama City main airports to arrive at

Northwest Florida Beaches International (ECP)

Cheapest

Northwest Florida Beaches International Airport is a convenient arrival airport for Panama City.

📍 ~26 km from Panama City (reachable by car)

💸 Flights from ~$448

Airports nearby Panama City used as alternative

Destin–Fort Walton Beach (VPS)

Destin–Fort Walton Beach is a useful alternative, serving the same coastal region with similar airline carriers.

📍 ~90 km from Panama City (ECP) (reachable by car, but traffic can be heavy during peak seasons).

💸 Flights from ~$319

Business & First Class Flight Deals to Panama City

73% AI deal score

$1,308

$1,112

Save $196

United Airlines

Business Class

From SJU

Elite

Oct 07

Panama City, United States

72% AI deal score

$1,279

$1,112

Save $167

United Airlines

Business Class

From SJU

Elite

Feb 18

Panama, Panama

68% AI deal score

$1,314

$948

Save $366

From SJU

Elite

Feb 24

Panama, Panama

68% AI deal score

$1,331

$976

Save $355

From SJU

Elite

Nov 17

Panama City, United States

68% AI deal score

$1,319

United Airlines

Business Class

From SJU

Elite

Sep 16

Panama, Panama

67% AI deal score

$1,733

$1,308

Save $425

From SJU

Elite

Oct 14

Panama City, United States

67% AI deal score

$1,319

United Airlines

Business Class

From SJU

Elite

Nov 04

Panama City, United States

67% AI deal score

$1,326

United Airlines

Business Class

Frequently Asked Questions About Flights to Panama City

To find more affordable flights, consider being flexible with your travel dates and times. Comparing prices across different airlines and booking sites can also help you discover better deals. Looking into flights with layovers may sometimes offer lower fares than direct routes.

Booking flights in advance often provides more competitive prices, though the ideal booking window can vary. Prices may fluctuate, so monitoring fares over time can help you identify a good moment to purchase. Weekday bookings sometimes present different pricing compared to weekend purchases.

Yes, comparing flights to and from nearby airports can sometimes uncover more economical options. While it may add to your ground travel time, the potential savings on airfare can be significant. Always factor in the cost and convenience of transportation to and from alternative airports.

Related routes

More routes from San Juan

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Flights to Panama City from other cities

Flights from Amsterdam to Panama City Flights from Barcelona to Panama City Flights from Bogotá to Panama City Flights from Frankfurt to Panama City Flights from Guayaquil to Panama City Flights from Hong Kong to Panama City Flights from Lisbon to Panama City Flights from Madrid to Panama City Flights from Medellín to Panama City Flights from Munich to Panama City Flights from Quito to Panama City Flights from San Miguel de Tucumán to Panama City

San Juan to Panama City: Overview

Insights for flights from San Juan to Panama City

How much is a round trip from San Juan to Panama City

Regular price: $296 - $555

Prices for flights from San Juan to Panama City are currently within the regular range.

The regular price range for this route is $296 to $555. The current lowest deal is $527 with United Airlines, for travel from Nov 9-Nov 16.

now $527

Low $296

High $555

The cheapest time to fly from San Juan to Panama City

November

Cheapest

Flights from $253

April

Most Expensive

Flights from $551

Apr

Jun

Sep

Nov

Direct flights from San Juan to Panama City

United Airlines

Deutsche Luft Hansa

American Airlines

Last-minute flights going from San Juan to Panama City

Tue, Sep 15

⌛ Last-Minute

SJU - Panama

San Juan (SJU) - Panama (PTY)

$366

$611

One-way

Wed, Sep 16

⌛ Last-Minute

SJU - Panama

San Juan (SJU) - Panama (PTY)

$464

$611

One-way

Wed, Sep 16

⌛ Last-Minute

SJU - Panama

San Juan (SJU) - Panama (PTY)

$417

$611

One-way

Wed, Sep 16

⌛ Last-Minute

SJU - Panama City

San Juan (SJU) - Panama City (ECP)

United Airlines

$408

$768

One-way

Wed, Sep 16

⌛ Last-Minute

SJU - Panama City

San Juan (SJU) - Panama City (ECP)

United Airlines

$409

$768

One-way

Thu, Sep 17

⌛ Last-Minute

SJU - Panama

San Juan (SJU) - Panama (PTY)

$641

$554

One-way

Biggest price drops on these dates for flights from San Juan to Panama City

4 nights

Sep 17 - Sep 21

$641 → $554

14%

1 night

Sep 16 - Sep 17

$652 → $611

4 nights

Oct 15 - Oct 19

$533 → $526

6 nights

Oct 28 - Nov 3

$510 → $526

Popular Airports to fly from San Juan to Panama City

San Juan - Panama City route insights

💸 Price insights

Recent fares are above the typical level

Recent fares for San Juan to Panama City are above the typical level at $527.

📅 Best time to fly

November is historically cheapest

Historically, November is the cheapest month to fly from San Juan to Panama City, with a median of $253.

⏱️ Flight duration

Typically 12h 12m with 1 stop

Flights from San Juan to Panama City typically take 12h 12m, usually with one stopover.

✈️ Airlines & availability

Connecting flights are dominant

This route is dominated by connecting flights, with no direct flights available in the last 90 days.

🏆 Airline highlight

United Airlines has recent deals

United Airlines has offered recent deals on this route, including a $527 fare from kiwi.

🎯 Booking tip

Deals are rare for this route

Deals on flights from San Juan to Panama City are historically rare, appearing infrequently.

San Juan main airports to depart from

Luis Muñoz Marín International (SJU)

Cheapest

Luis Muñoz Marín International Airport is a convenient option for flights from San Juan to Panama City.

📍 ~11 km from San Juan (reachable by car)

💸 Flights from ~$448

Panama City main airports to arrive at

Northwest Florida Beaches International (ECP)

Cheapest

Northwest Florida Beaches International Airport is a convenient arrival airport for Panama City.

📍 ~26 km from Panama City (reachable by car)

💸 Flights from ~$448

Airports nearby Panama City used as alternative

Destin–Fort Walton Beach (VPS)

Destin–Fort Walton Beach is a useful alternative, serving the same coastal region with similar airline carriers.

📍 ~90 km from Panama City (ECP) (reachable by car, but traffic can be heavy during peak seasons).

💸 Flights from ~$319

Panama City, United States

73% AI deal score

$1,308

$1,112

Save $196

United Airlines

Business Class

From SJU

Elite

Oct 07

Panama City, United States

72% AI deal score

$1,279

$1,112

Save $167

United Airlines

Business Class

From SJU

Elite

Feb 18

Panama, Panama

68% AI deal score

$1,314

$948

Save $366

From SJU

Elite

Feb 24

Panama, Panama

68% AI deal score

$1,331

$976

Save $355

From SJU

Elite

Nov 17

Panama City, United States

68% AI deal score

$1,319

United Airlines

Business Class

From SJU

Elite

Sep 16

Panama, Panama

67% AI deal score

$1,733

$1,308

Save $425

From SJU

Elite

Oct 14

Panama City, United States

67% AI deal score

$1,319

United Airlines

Business Class

From SJU

Elite

Nov 04

Panama City, United States

67% AI deal score

$1,326

United Airlines

Business Class

Frequently Asked Questions About Flights to Panama City

Cheap Flights from San Juan to Panama City

Today’s best flight deals from San Juan to Panama City

San Juan to Panama City: Overview

Insights for flights from San Juan to Panama City

How much is a round trip from San Juan to Panama City

The cheapest time to fly from San Juan to Panama City

Direct flights from San Juan to Panama City

Last-minute flights going from San Juan to Panama City

Biggest price drops on these dates for flights from San Juan to Panama City

Popular Airports to fly from San Juan to Panama City

San Juan - Panama City route insights

Recent fares are above the typical level

November is historically cheapest

Typically 12h 12m with 1 stop

Connecting flights are dominant

United Airlines has recent deals

Deals are rare for this route

San Juan main airports to depart from

Panama City main airports to arrive at

Airports nearby Panama City used as alternative

Business & First Class Flight Deals to Panama City

Best Elite deals to Panama City

Oct 14

Dec 03

Oct 27

Sep 16

Oct 24

Oct 07

Feb 18

Feb 24

Nov 17

Sep 16

Oct 14

Nov 04

Frequently Asked Questions About Flights to Panama City

How can I find cheap flights from San Juan to Panama City?

When should I book flights from San Juan to Panama City?

Should I compare nearby airports for flights from San Juan to Panama City?

Are direct flights from San Juan to Panama City always the best option?

Can flexible travel dates help on San Juan to Panama City flights?

What extra costs should I check before booking San Juan to Panama City flights?

Related routes

More routes from San Juan

Flights to Panama City from other cities

San Juan to Panama City: Overview

Insights for flights from San Juan to Panama City

How much is a round trip from San Juan to Panama City

The cheapest time to fly from San Juan to Panama City

Direct flights from San Juan to Panama City

Last-minute flights going from San Juan to Panama City

Biggest price drops on these dates for flights from San Juan to Panama City

Popular Airports to fly from San Juan to Panama City

San Juan - Panama City route insights

Recent fares are above the typical level

November is historically cheapest

Typically 12h 12m with 1 stop

Connecting flights are dominant

United Airlines has recent deals

Deals are rare for this route

San Juan main airports to depart from

Panama City main airports to arrive at

Airports nearby Panama City used as alternative

Business & First Class Flight Deals to Panama City

Best Elite deals to Panama City

Oct 14

Dec 03

Oct 27

Sep 16

Oct 24

Oct 07

Feb 18

Feb 24

Nov 17

Sep 16

Oct 14

Nov 04

Frequently Asked Questions About Flights to Panama City

How can I find cheap flights from San Juan to Panama City?

When should I book flights from San Juan to Panama City?

Should I compare nearby airports for flights from San Juan to Panama City?